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April 08, 2009

Evolution-Proof?

Which animals kill the most humans? Lions and tigers and bears? Oh no, malaria-transmitting mosquitoes! The risks of using insecticides to kill mosquitoes may be outweighed by the benefits, but those benefits only last until mosquito populations evolve resistance. Careful use (insecticide-treated bed-nets, for example, rather than spraying wetlands) can slow the evolution of resistance, but we haven't yet achieved a goal I recently saw on a bumper sticker, namely, to "Stop Evolution Now!"

Can we do better? A paper published today suggests a new approach. "How to make evolution-proof insecticides for malaria control" was written by Andrew Read and colleagues. It's in the open-access journal, PLoS Biology, so you can read the whole article for details, but here's my summary:

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March 20, 2009

No butterflies were harmed by this research

With a species using cryptic resemblance [camouflage] for its protection, the very existence of neighbours involves a danger to the individual, since the discovery of one by a predator will be a step in teaching it to recognize the crypsis. With an aposematic [bad-tasting, warning-coloration] species, on the other hand, the existence of neighbours is an asset, since they may well serve to teach an inexperienced predator the warning pattern. -- William Hamilton, 1964
This week's paper describes research that could have been a winning science fair project. "Does colour polymorphism enhance survival of prey populations?", published online by Lena Wennersten and Anders Forsman in Proceedings of the Royal Society, helps answer an interesting evolutionary question, using materials available in many kitchens.

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January 02, 2009

Ford Denison, amateur scientist

My NSF grant will run out soon, so I get to spend the year in which we celebrate the 200th anniversary of Darwin's birth and the 150th anniversary of The Origin of Species as an amateur scientist, like Darwin himself. I'm not as smart or as rich as he was, but I do have imaginative and hard-working students and much better equipment.

I'm working on two grant proposals and several papers while dreaming of getting back to writing my book, so no detailed paper analysis this week. But Nature is highlighting 15 major papers on evolution they have published in the last few years. If you've already read them all -- I haven't -- here are some new papers that I thought looked interesting this week:

Nanodiamonds in the Younger Dryas Boundary Sediment Layer
Apparent evidence for major meteor or comet impact about the time mammoths etc. went extinct in North American. Could this have been more important than hunting?

The Bacterial Symbiont Wolbachia Induces Resistance to RNA Viral Infections in Drosophila melanogaster
Bacteria that mess up reproduction in insects they infect also provide some protection against viruses, presumably for their own selfish reasons!

Stable Introduction of a Life-Shortening Wolbachia Infection into the Mosquito Aedes aegypti A Wolbachia strain that shortens mosquito life-span could prevent them from transmitting the malaria parasite, because the parasite needs time to develop in the mosquito. Ed Yong has details. There's often a tradeoff between lifespan and early reproduction, so we might end up with more mosquitoes but less malaria.

Adaptive protein evolution grants organismal fitness by improving catalysis and flexibility A detailed analysis of two mutations affecting an enzyme bacteria use to break down antibiotics. They suggest that their approach could help us design antibiotics to which pathogen populations would not evolve resistance as quickly.

Indirect reciprocity provides only a narrow margin of efficiency for costly punishment Based on a model, they claim that the "efficient strategy for indirect reciprocity is to withhold help for defectors rather than punishing them." Are they assuming that refusing to help someone will not trigger the same retaliation that "punishing" them will?

High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography
The bacteria that cause TB are evolving resistance to antibiotics, a classic example of (natural?) selection. But selection isn't the only force driving evolution. They analyzed TB bacteria DNA from around the world and found that genetic drift and gene flow (much of it driven by human travel) are also important.

October 18, 2008

Cooperative fish, cheating ants

Cooperation is widespread in nature, despite theoretical predictions that "cheating" mutants could displace cooperators over just a few generations of evolution. We don't apply human moral standards to other species, of course, but define cheating as contributing less, while benefiting from activities of others. The evolutionary persistence of cooperation is usually attributed to reciprocity (trading resources or services) or to kin selection: cooperation among relatives, such as parental care, can persist even without reciprocity. Fish that clean parasites from other fish are a standard example of reciprocity -- they get to eat the parasites -- whereas nonreproductive worker ants are a standard example of kin selection. I will briefly discuss one recent paper on each of these.

Redouan Bshary and coauthors report in Nature that "Pairs of cooperating cleaner fish provide better service quality than singletons." Cleaner fish often prefer to eat client mucus (yum!) than client parasites, but clients don't like this and tend to leave. When a male and female cleaner work together, the client fish may leave if either of them takes a bite of mucus. Females, in particular, were less likely to do this when cleaning with their male partner rather than alone. The authors also did an experiment to see whether cleaner fish would eat a less-preferred food (fish flakes, perhaps analogous to client parasites) if eating their more-preferred food (prawns, perhaps analogous to client mucus) resulted in the food plate being taken away. They did, especially the females. This may have been because the male often chased her if she ate a prawn, costing them both the rest of their meal. Overall, pairs appear to provide better service to clients, because they are better-behaved together than alone, especially the female.

Shigeto Dobata and coauthors reported on "Cheater genotypes in the parthenogenetic ant Pristomyrmex punctatas" in Proceedings of the Royal Society. Social insects, such as ants and bees, usually have reproductive queens and nonreproductive workers. Worker genes are transmitted to the next generation by the queen, who is typically the workers' mother and therefore shares most of their genes. Pristomyrmex punctatas is different. An individual ant may reproduce (usually when young) and also work. Some individuals are more like queens, however. These are larger, reproduce more, and do little or no work for the colony. If these nonworking ants were close relatives of the workers, this behavior could perhaps be maintained by kin selection. It could be an example of division of labor for mutual benefit, a less-extreme version of the more-familiar worker/queen division. So Dobata and coauthors analyzed the DNA of hundreds of ants to see how they were related. They found that these nonworking ants were much less closely related to workers than queens usually are. Most of the ants (working or not) reproduced parthenogenetically, essentially cloning themselves without sex. Working hard while unrelated individuals profit from your work doesn't usually work out over the long run, but these nonworking ants have been seen in the field for over 25 years. Is this an evolutionary dead end? A similar situation with Cape honey bees, whose colonies are parasitized by unrelated "pseudoqueens" usually leads to colony extinction. I look forward to reading more about this interesting ant species.

July 17, 2008

More talks from Evolution 2008

I’m done with two grant proposals, revising a book chapter, and checking the final version of a review article. I still have a pile of interesting reading and writing to do before I can get back into the lab – actually, I did help Ryoko set up an experiment yesterday – but no more looming deadlines for awhile. So, here are two more summaries of talks from Evolution 2008.

Do I know you?

The ability to tell other individuals apart by their faces is presumably maintained by natural selection, so you can recognize and avoid bad guys. But is there also selection for looking different enough to be recognizable? Or is it better to blend in with the crowd, so you can get away with stuff?

Michael Sheehan and Elizabeth Tibbetts are studying individual recognition in wasps (Tibbetts and Dale, 2007). Their hypothesis is that distinctive-looking individuals benefit, because they get in fewer fights over dominance.
4fuscatus.jpg

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June 29, 2008

Evolution 2008: sexy plants, battling bacteria, durable cooperation

About 1500 scientists attended Evolution 2008 here last week. The four-day meeting was filled with 15-minute talks (usually ten at once, in different rooms), plus two evening poster sessions (like a science fair, for grownups, with discussions rather than judging), scenically located on a pedestrian bridge over the Mississippi. Reports that “scientists are abandoning evolution�? appear to be exaggerated.

Here are summaries of some of the talks I enjoyed.

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May 31, 2008

Traditional values in bees

The beehive was an early Mormon icon, symbolizing hard work and cooperation. To an evolutionary biologist, however, a beehive could symbolize reproductive skew, a situation where some individuals reproduce much more than others. Extreme reproductive skew is one of the defining characteristics of eusocial species, of which honey bees are a prime example. Reproductive skew can differ between the sexes. In honey bees, the queen lays most of the eggs, and most females don’t reproduce at all. Polygamous species and groups show the opposite pattern: males vary much more in reproductive success than females do. Maybe an inverted beehive would have been a better symbol. Note that the cells in our bodies behave somewhat like a eusocial bee colony; any children we have are directly descended from a few sex cells, while brain cells and skin cells play the supporting role of worker bees.

This week’s paper, “Ancestral monogamy shows kin selection is key to the evolution of eusociality� was published in Science by William Hughes and others. Like humans, some bees are monogamous, meaning that the queen mates with only one male, so her daughters (the workers) are all sisters. In other bee species, the queen mates with several males, so her daughters are half-sisters. Relatedness generally favors cooperation, although there are some possible complications, discussed below.

This week’s paper asks how mating behavior affects the evolution of eusociality. They reasoned that, if mating system doesn’t matter, then today’s eusocial species could be descended from either monogamous, polygamous, polyandrous (each female has multiple mates), or promiscuous ancestors. Alternatively, eusociality may evolve more easily with one of these mating systems than with the others.

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May 25, 2008

Pest control for ants

Ant.jpeg

(Top) A small leafcutter worker atop a leaf guards her sister against attacks by parasitic flies. Ants carrying leaves cannot use their mandibles for defense, so they carry hitchhikers to ward off the parasites. (Bottom) The fungus garden in a nest of Atta leaf-cutter ants. Notice the diversity of ant sizes within a colony, from the large red soldier ants to the minute orange ants tending to the garden. Atta ants have some of the most sophisticated caste systems among the social insects. -- photos and captions from Alex Wild (mymercos.net)

"Ant2.jpeg
This week’s paper, “Black yeast symbionts compromise the efficiency of antibiotic defenses in fungus-growing ants" by Ainslie Little and Cameron Currie, was just published in Ecology. Elsa Youngsteadt interviewed me, among others, for a story in Science about this research.

I’ve never done research on the fungal “farms" of ants and termites, but I’ve been interested in them every since a camera company bought a close-up photo (not Photoshopped like this one) of an ant carrying a leaf along a barbed wire “bridge" on its way back to its nest, from my mycologist father, William Denison. Dad was best known for pioneering research in the tops of tall trees, but never had to fight a shaman, as far as I know.

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April 19, 2008

Separate vacations and other sexual differences

Three recent papers in Proceedings of the Royal Society discuss differences between males and females or, in one case, among males.

“The costs of risky male behaviour: sex differences in seasonal survival in a small sexually monomorphic primate� by Cornelia Kraus and others, is based on a 10-year study of differences between male and female behavior in grey mouse lemurs. During the breeding season, males had lower survival than females, despite any possible risks associated with pregnancy or raising young. The higher risk for males apparently resulted from their tendency to travel more, looking for females.

The sexes also differ in winter behavior: females hibernate, while males remain active. Is there something about female physiology that makes hibernation healthier for them than it would be for males? Maybe, but there was no difference in winter survival between the sexes, which don’t differ much in size in this lemur species. The authors suggest that hibernation might have longer-term benefits in females, such as increased lifespan, whereas males need to stay active to bulk up in preparation for the breeding season.

This paper reminded me of an earlier paper on albatrosses, in which "in each pair, the male spent the winter just north of the pack ice in Antarctic waters whereas the female stayed south of Madagascar." It’s not hard to understand why males and females might differ in various ways (size, color, etc.) but differences in behavior outside of the breeding season are more interesting.

The second paper addresses an old argument between Charles Darwin and Alfred Russel Wallace, who developed similar explanations of evolution by natural selection at about the same time.

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March 31, 2008

Learning vs. lifespan?

For my first 100 posts, I’ve ignored journals with “evolution� in their names, to make the point that evolution is at the heart of biology, rather than an “appendix.� Much of our DNA can be deleted without obvious ill effect, but taking evolution out of biology would kill it as an explanatory, hypothesis-driven science. Point made? This week I untie my hands and discuss a paper from one of the 30+ scientific journals that focus on evolutionary biology.

“Learning ability and longevity: a symmetrical evolutionary tradeoff in Drosophila� by Joep Burger, Munjong Koss, and others, will appear soon in the journal, Evolution.

The ability to learn is useful under a wide range of conditions, but is it always beneficial? If so, why do most species have limited learning ability? Is there some evolutionary constraint, such as head size, that prevents evolving greater learning ability? Apparently not. Artificial selection for learning ability has been successful in several species. When artificial selection imposed by humans achieves something in months that natural selection has failed to do in millions of years, that suggests that the “improvement� has some cost that exceeds its benefits, at least in nature. But could the ability to learn really have a cost that exceeds its benefits?

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March 09, 2008

Tricky parasites winning the evolutionary arms race

Two papers this week describe recently discovered sophisticated adapatations of two different parasites: Gall insects can avoid and alter indirect plant defenses, published in New Phytologist by John Tooker and colleagues, and Parasite-induced fruit mimicry in a tropical canopy ant, published in American Naturalist by Steve Yanoviak and colleagues (if you're in a hurry, skip to the end for amazing photos).

Various plants recruit "bodyguards" when attacked by insects. For example, when caterpillars start munching on corn (maize) plants, the plants (including uninjured leaves) release gaseous chemicals called terpenoids. These terpenoids attract parasitic wasps, which lay their eggs into the caterpillars. This eventually kills the caterpillars, which presumably benefits the plant. But what if the caterpillars could prevent the plant from signaling to the wasps? As far as I know, caterpillars haven’t evolved this trick (yet), but there are apparently some insects – the Hessian fly, Mayetiola destructor (say) – that do not trigger signaling when they feed on wheat plants. There are at least two possible explanations…

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February 25, 2008

Reversing evolution: conspicuous mimicry vs. camoflage

Two papers this week on the type of mimicry named for Henry Bates, whose book on exploring the Amazon was published shortly after The Origin of Species. Batesian mimic species resemble foul-tasting or dangerous species, thereby avoiding being eaten, even though they are not actually dangerous themselves. Bates worked on butterflies whose wing patterns resembled those of other species. Butterflies are still the best-known examples of mimicry, but there are also examples of mimicry (involving behavior) in snakes and octopi.

The two papers are:
Once a Batesian mimic, not always a Batesian mimic: mimic reverts back to ancestral phenotype when the model is absent
by Kathleen Prudic and Jeffrey Oliver, of the University of Arizona, and
Colour pattern specification in the Mocker swallowtail Papilio dardanus: the transcription factor invected is a candidate for the mimicry locus H
by Rebecca Clark and colleagues in the UK, Australia, Kenya, and Germany. Both were published in Proceedings of the Royal Society.

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February 18, 2008

Natural enemies complicate reproductive tradeoffs

Semelparous plants and animals are those that reproduce only once, whether after a few months of growth (annual plants, like wheat) or after years (“century plant� or most salmon). Iteroparous species iterate. That is, they reproduce repeatedly. For example, perennial grasses may produce seeds every year for a decade or more.

One reason this difference matters is that perennial crops may have some environmental benefits, relative to annual crops. Plowing, traditionally more common with annual than perennial crops, can greatly increase soil erosion, especially on steep slopes. So there is increasing interest in developing perennial grain crops as an alternative to wheat.

However, perennial plants have lower seed yield than their annual relatives, so we would need to devote more land to agriculture to get the same amount of grain. One reason for the yield difference is that an annual plant can transfer most of the carbon (energy) and nitrogen (needed for protein) from its leaves, stem, and roots into its seeds. It’s going to die anyway, so the next generation gets its accumulated wealth. A perennial plant needs to hold back some carbon and nitrogen for winter survival and spring regrowth. The more resources it puts into this year’s seed production, the less it can carry forward to support reproduction next year.

This week’s paper shows that iteroparous plants face additional costs when they reproduce, namely, ecological costs. “Herbivore-mediated ecological costs of reproduction shape the life history of an iteroparous plant� was written by Tom Miller and colleagues at the University of Nebraska (where I’ll be speaking on Darwinian Agriculture in April) and published in American Naturalist.

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January 10, 2008

Ants en't ents

Science advances by disproving previously-tenable hypotheses. For example, "The earth is <10,000 years old" was disproved by annual sediment layers long before we were able to estimate the actual age. Actually, Tom Kinraide and I argued in "Strong inference -- the way of science" that a hypothesis needs to be explanatory as well as falsifiable. So for a young earth to ever have qualified as a hypothesis, it would first have needed to explain at least some real world observations. Right off hand, I can't think of any actual data that an unbiased person would look at and say, "Well, these data would make sense, but only if we assume the earth is <10,000 years old."

Similarly, if someone wanted to convert "intelligent design" from religious whining into a scientific discipline, we'd need some falsifiable hypotheses. Suppose, for example, we hypothesized that current features of plants and animals (not just their single-celled, distant ancestors) were supernaturally-imposed designs to maximize their success. That hypothesis is consistent with the many examples of sophisticated adaptations (err, "design"), but what can we conclude from the many examples of maladaptation ("bad design")? Maladaptation is predicted by evolutionary theory (when current conditions don't match those under which past selection occurred, for example) but if some design team is continuously intervening in evolution, do maladaptations imply that they had a busy week? If so, should we expect the problem to instantly disappear, once they get around to it?

This week's paper is another example of the pattern we see repeatedly in biology: many sophisticated adaptations, but also serious "design flaws." In particular, Acacia trees can be fooled into feeding and housing ants that are harming them.

Breakdown of an Ant-Plant Mutualism Follows the Loss of Large Herbivores from an African Savanna was published this week in Science by Todd Palmer and five coauthors, three of whom I know from my years at UC Davis.

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December 07, 2007

The ghost of infections past, present, and future

Summary: A 39-year record of host-parasite interaction, recovered from sediment layers in a pond, is consistent with rapid coevolution.
Link: Host-parasite /`Red Queen/' dynamics archived in pond sediment

As I've discussed previously, archival samples often prove useful for answering questions that weren't being asked when the samples were collected. But what if nobody collected and preserved the samples you need for your research? Maybe you can find a "natural archive" that has what you need.

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August 31, 2007

Whose genes are these, anyway?

Most of the genome of Wolbachia, a bacterial parasite of fruit flies, has been incorporated into the genome of the fruit-fly itself. Discussion at Not Exactly Rocket Science. Bacteria tend to pass genes around, or (more accurately, perhaps) bacterial genes tend to move themselves around (usually to other bacteria), but this is amazing.

August 17, 2007

Almost a no-brainer

How sophisticated behavior would you expect from an animal with a brain as small as a wasp's? Few, if any, female wasps have read David Lack's classic paper on the optimum number of eggs to lay, or even John Dennehy's clear summary of it. This week's paper asks whether they, nonetheless, adjust egg numbers optimally in response to competition from other wasps and resource availability.

"Encountering competitors reduces clutch size and increases offspring size in a parasitoid with female–female fighting" was written by Marlene Goubault, Alexandra Mack, and Ian Hardy, of the University of Nottingham, and published in Proceedings of the Royal Society.

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July 23, 2007

Diversity, stability, productivity, and policing

This week I will discuss two papers, both of which consider possible benefits of biological diversity. In interpreting the data in the experimental paper, on bees, we need to remember that a given set of data can often be consistent with two or more different hypotheses. This point is reinforced in the review article, which discusses the relationship between diversity and stability of ecosystems.

The experimental paper is "Genetic diversity in honey bee colonies enhances productivity and fitness" by Heather Mattila and Thomas Seeley, of Cornell University (Science 317:362). The review article is "Stability and diversity of ecosystems" by Anthony Ives and Stephen Carpenter, of the University of Wisconsin (Science 317:58).

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May 20, 2007

Rapid evolution of beneficial infections

Given my location halfway between the Twin Cities of Minneapolis and St. Paul, and my childish love of clever acronyms, I sometimes wish I'd named this blog This Week In Natural Selection. But then I suppose I'd have to review a pair of closely related papers each week. I'm going to do that this week, anyway.

This week's twins were both published in PLoS Biology, so both are freely available on-line. Both have new data on bacteria that infect insects. Both help us understand the conditions under which infecting bacteria evolve to be beneficial, rather than harmful. Finally, both disprove, again, the popular idea that any evolutionary change big enough to matter (except antibiotic resistance, which a creationist commenter once claimed always involves "horizontal transfer" of genes among bacteria, even though resistance often evolves in bacteria in a closed container all descended from a single cell) always involves lots of genes and takes millions of years. Evolution is our present and future, not just our past.

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March 31, 2007

Can a selfish gene stop malaria?

A bird that risks her life to lead a fox away from her chicks may be influenced by a "selfish gene" (Dawkins, 1976). Genes can't think, of course. However, a gene causing behavior that risks the loss of one copy of itself (in the mother) will become more common over time, if this same behavior often saves more than one copy of itself (in the chicks). The gene can be considered "selfish", in the sense that the welfare of the mother, her species, or the whole ecosystem only indirectly affect the gene's spread. It's as if each gene were at war with rivals (other versions of the gene, or alleles) for its place on the chromosome.

The selfish gene concept is now being used to design new methods to control the spread of disease. Mosquitoes that resist infection by the malaria parasite can be made by genetic engineering. Unfortunately, the small benefit (to a mosquito) of resistance to this parasite is probably not enough for resistant mosquitoes to take over in the wild, because most of the animals they bite aren't infected. (It would be nice if the laws of nature always favored human welfare, but they don't.)

How can we make such beneficial genes spread through mosquito populations? This week's paper, "A Synthetic Maternal-Effect Selfish Genetic Element Drives Population Replacement in Drosophila" by Chun-Hong Chen and colleagues at Cal Tech and UCLA, published on-line in Science, demonstrates one interesting approach.

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February 28, 2007

Experimental evolution: play dead or fly away?

Last week's paper discussed trade-offs between seed size and seed number. Many such trade-offs (growth vs. reproduction, more seeds vs. taller stem, etc.) follow directly from conservation of matter or energy, but what about other sorts of trade-offs? It has been suggested, for example, that there is a trade-off between competitiveness and dispersal ability. Why should this be? For seeds, at least, a larger seed gives the seedling a head-start against competitors, but smaller seeds travel farther on the wind.

This week's paper proposes another trade-off, for which the mechanism is less obvious. "Drop or fly? Negative genetic correlation between death-feigning ability and flying ability as alternative anti-predator strategies", was written by Tatunori Ohno and Takahisa Miyatake and published in Proceedings of the Royal Society B (vol. 274, p. 555-560).

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